{"cited_by_count":8591500,"description":"This cluster of papers focuses on the statistical analysis, alignment, and annotation of RNA sequencing data, including methods for transcript quantification, phylogenetic analysis, genome assembly, and quality assessment in functional genomics. It also covers tools for sequence variation analysis and metagenomics assembly.","display_name":"Genomics and Phylogenetic Studies","domain_id":"1","external_ids":{"openalex":"https://openalex.org/T10015","wikipedia":"https://en.wikipedia.org/wiki/RNA-Seq"},"field_id":"13","id":"T10015","keywords":[{"display_name":"genome assembly","id":"genome-assembly","score":0.3724,"url":"https://openalex.org/keywords/genome-assembly"},{"display_name":"genome annotation","id":"genome-annotation","score":0.3595,"url":"https://openalex.org/keywords/genome-annotation"},{"display_name":"bacterial nomenclature","id":"bacterial-nomenclature","score":0.2222,"url":"https://openalex.org/keywords/bacterial-nomenclature"},{"display_name":"comparative genomics","id":"comparative-genomics","score":0.206,"url":"https://openalex.org/keywords/comparative-genomics"},{"display_name":"mitochondrial genome","id":"mitochondrial-genome","score":0.3035,"url":"https://openalex.org/keywords/mitochondrial-genome"},{"display_name":"metagenomics","id":"metagenomics","score":0.237,"url":"https://openalex.org/keywords/metagenomics"},{"display_name":"phylogenetic inference","id":"phylogenetic-reconstruction","score":0.4025,"url":"https://openalex.org/keywords/phylogenetic-reconstruction"},{"display_name":"sequence alignment","id":"sequence-alignment","score":0.3125,"url":"https://openalex.org/keywords/sequence-alignment"},{"display_name":"phylogenetic tree","id":"phylogenetic-tree","score":0.2427,"url":"https://openalex.org/keywords/phylogenetic-tree"},{"display_name":"long-read sequencing","id":"long-read-sequencing","score":0.4412,"url":"https://openalex.org/keywords/long-read-sequencing"},{"display_name":"bioinformatics software","id":"bioinformatics-software","score":0.2989,"url":"https://openalex.org/keywords/bioinformatics-software"},{"display_name":"genome sequencing","id":"genome-sequencing","score":0.2141,"url":"https://openalex.org/keywords/genome-sequencing"},{"display_name":"phylogenomics","id":"phylogenomics","score":0.2381,"url":"https://openalex.org/keywords/phylogenomics"},{"display_name":"novel bacterial species","id":"novel-bacterial-species","score":0.2562,"url":"https://openalex.org/keywords/novel-bacterial-species"},{"display_name":"protein-coding genes","id":"protein-coding-genes","score":0.4265,"url":"https://openalex.org/keywords/protein-coding-genes"},{"display_name":"multiple sequence alignment","id":"multiple-sequence-alignment","score":0.4577,"url":"https://openalex.org/keywords/multiple-sequence-alignment"},{"display_name":"RNA-seq","id":"rna-seq","score":0.2067,"url":"https://openalex.org/keywords/rna-seq"},{"display_name":"bioinformatics pipeline","id":"bioinformatics-pipeline","score":0.2761,"url":"https://openalex.org/keywords/bioinformatics-pipeline"},{"display_name":"genome sequence","id":"genome-sequence","score":0.2862,"url":"https://openalex.org/keywords/genome-sequence"},{"display_name":"Archangium","id":"archangium","score":0.5253,"url":"https://openalex.org/keywords/archangium"},{"display_name":"bacterial genomes","id":"bacterial-genomes","score":0.3246,"url":"https://openalex.org/keywords/bacterial-genomes"},{"display_name":"variant calling","id":"variant-calling","score":0.2623,"url":"https://openalex.org/keywords/variant-calling"},{"display_name":"metagenome-assembled genomes","id":"metagenome-assembled-genomes","score":0.3179,"url":"https://openalex.org/keywords/metagenome-assembled-genomes"},{"display_name":"Herpetosiphon","id":"herpetosiphon","score":0.6094,"url":"https://openalex.org/keywords/herpetosiphon"},{"display_name":"reference genome","id":"reference-genome","score":0.4731,"url":"https://openalex.org/keywords/reference-genome"}],"legacy_keywords":["RNA-seq","sequence alignment","phylogenetic analysis","genome annotation","transcript quantification","metagenomics assembly","sequence variation","phylogenetic tree","functional genomics","quality assessment"],"openalex_id":"https://openalex.org/T10015","source_created_date":"2024-01-23T15:27:04","source_updated_date":"2026-10-17T03:02:00","subfield_id":"1312","url":"/topics/T10015","works_api_url":"https://api.openalex.org/works?filter=topics.id:T10015","works_count":390067,"label":"Genomics and Phylogenetic Studies","provider":"openalex","revision":"237b957d1a14c256","taxonomy_revision":"f050b5d4780b1289","title":"Genomics and Phylogenetic Studies","kind":"topic-directory","aeo_cohort":"topic-directory","catalogue_revision":"f050b5d4780b1289","numeric_address":"36042592458680971","address_version":"morton4x16-v1","coordinates":[1,13,1312,10015],"answer_status":"Directory metadata; local answer requires separate source review","truth_status":"Subject descriptor, not a factual answer or a demonstrated knowledge gap","reviewed_answer":null}